运行命令:./Cocluster- -A e -C 3 -R 3 -E 1 -I d t test.txt -O c b 1 o output.txt
输出结果每3行是一组聚类
第一行是几乘几
第二行和第三行分别是行标和列标
参考文献:
Co-clustering of Human Cancer Microarrays using Minimum Sum-Squared Residue Co-clustering, H. Cho and I.S. Dhillon, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 5:3, pages 385-400, July 2008. 作者: zouquan 时间: 2013-4-20 22:47 http://www.eisenlab.org/EisenData.htm
主要是酵母的基因表达数据
参考文献:郎显宇,陆忠华,迟学斌.一种基于“基因表达谱”的并行聚类算法.计算机学报.2007,30(2):311-316作者: zouquan 时间: 2013-4-25 22:39
deep learning 代码,见http://datamining.xmu.edu.cn/bbs ... wthread&tid=893作者: aaronwxb 时间: 2013-4-26 21:17
特征选择方法——Rankgene
参考文献:Y. Su, T.M. Murali, V. Pavlovic, and S. Kasif, “Rankgene:Identification of Diagnostic Genes Based on Expression Data,”
Bioinformatics, http://genomics10.bu.edu/yangsu/rankgene/,2003.作者: aaronwxb 时间: 2013-4-26 21:19
参考论文:H. Peng, F. Long, and C. Ding, “Feature Selection Based on Mutual Information: Criteria of Max-Dependency, Max-Relevance, and Min-Redundancy,” IEEE Trans. Pattern Analysis and Machine Intelligence, vol. 27, no. 8, pp. 1226-1238, Aug. 2005.作者: 廖原路 时间: 2013-4-27 15:51
李涛特征选择的实验数据